Perform automated fitting on a folder of waves

I have a folder of x and y waves of the format xco_1, yco_2, xco_2, yco_2, etc. I am trying to perform automated peak fitting on all the x,y wave pairs in the folder and output a table with the peak fitting parameters. The waves are somewhat similar in terms of expected peak numbers with small changes in areas and possitions from file to file. Can I use the builtin Multi-peak fit package with a procedure to accomplish this? If so how would I structure the procedure?
First, in the Multipeak Fit 2 control panel, click the Help button. Read the section "Multi-Peak Fitting for Igor Programmers" and particularly the section about MPF2_AutoMPFit(). You will now be confused :) but you will have specific questions to ask about it.

John Weeks
WaveMetrics, Inc.
support@wavemetrics.com