Bonferroni Step-down correction
sdriscoll
//*********************************************************************
// statsBSDC
//
// Implements Bonferroni Step-down correction.
//
// Parameters:
// w - input wave of p-values
//
// Optional Parameters:
// ncol - column number of p-values if input wave w is a 2D matrix
//*********************************************************************
function statsBSDC(w,[ncol])
//-----------------------------------------------------------------
// parameters
//-----------------------------------------------------------------
wave w;
variable ncol;
//-----------------------------------------------------------------
// variables
//-----------------------------------------------------------------
variable npnts,ndim;
//-----------------------------------------------------------------
// init variables
//-----------------------------------------------------------------
if(paramIsDefault(ncol))
ncol = 0;
endif
npnts = dimsize(w,0);
ndim = dimsize(w,1);
//-----------------------------------------------------------------
// main function
//-----------------------------------------------------------------
// copy p-values out to new wave and make index wave
make/free/n=(npnts) wpv,wpi;
if(ndim)
wpv[] = w[p][ncol];
else
wpv[] = w[p];
endif
// populate index wave
wpi[] = p;
// sort from lowest to highest p-value
sort wpv,wpv,wpi;
// perform scaling correction
wpv[] = wpv[p]*(npnts-p);
// restore original sorting
sort wpi,wpv,wpi;
// copy adjusted p-values to original wave
if(ndim)
w[][ncol] = wpv[p];
else
w[] = wpv[p];
endif
// set p-values greater than 1 to 1
w[] = w[p] > 1 ? 1 : w[p];
end
// statsBSDC
//
// Implements Bonferroni Step-down correction.
//
// Parameters:
// w - input wave of p-values
//
// Optional Parameters:
// ncol - column number of p-values if input wave w is a 2D matrix
//*********************************************************************
function statsBSDC(w,[ncol])
//-----------------------------------------------------------------
// parameters
//-----------------------------------------------------------------
wave w;
variable ncol;
//-----------------------------------------------------------------
// variables
//-----------------------------------------------------------------
variable npnts,ndim;
//-----------------------------------------------------------------
// init variables
//-----------------------------------------------------------------
if(paramIsDefault(ncol))
ncol = 0;
endif
npnts = dimsize(w,0);
ndim = dimsize(w,1);
//-----------------------------------------------------------------
// main function
//-----------------------------------------------------------------
// copy p-values out to new wave and make index wave
make/free/n=(npnts) wpv,wpi;
if(ndim)
wpv[] = w[p][ncol];
else
wpv[] = w[p];
endif
// populate index wave
wpi[] = p;
// sort from lowest to highest p-value
sort wpv,wpv,wpi;
// perform scaling correction
wpv[] = wpv[p]*(npnts-p);
// restore original sorting
sort wpi,wpv,wpi;
// copy adjusted p-values to original wave
if(ndim)
w[][ncol] = wpv[p];
else
w[] = wpv[p];
endif
// set p-values greater than 1 to 1
w[] = w[p] > 1 ? 1 : w[p];
end
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